Command-line Applications

yap: A phylogenomic pipeline. Currently under development. Written in Rust. link to yap

simple-qc: A high-performance, single executable cli app to get NGS stats. Written in Rust. link to yap

spades-runner: Batch assembling NGS reads using SPAdes. Written in Rust. link to yap

fastp-runner: Batch adapter trimming and data cleaning using Fastp. Written in Rust. link to yap

ucemr: A simple interactive cli app for genomic labwork. Written in C. link to yap

journal-unlocker: A tool to proxify paywalled scientific papers. Written in Python. link to yap

py-genbank: A simple tool to automate fasta file preparation for GenBank BankIt Sanger submission. Written in Python. link to yap

clicov: A cli app to access covid-19 data. Written in Python. link to yap

Miscellaneous Code

Rust

pretty-header link to yap

seq-finder link to yap

gc-counter link to yap

R

r-data-analyses link to yap

Python

py-seq link to yap

py-data-wrangling link to yap

excel-csv-converter link to yap

Multi-langs

stats-from-scratch link to yap

genomic-code-snippets link to yap

this website link to yap