Publications
Forthcoming
Handika, H. , Moncrieff, A. E., Del-Rio G., Canton, R., Rutledge, S. L., Hernández-Canchola, G., Babb-Biernacki, S. J. Chipps, A. S., Pérez-Amaya, N., Chornelia, A., Morales-Martínez, D. M., McCallum, Q., Thom, G., Esselstyn, J. A. In prep. NAHPU: A field cataloging application for efficient, repeatable, and inclusive museum-based evolutionary studies.
Giarla, T. C., Achmadi, A.S., Fabre, P. H., Handika, H. , Chipps, A. S., Swanson, M.T., Nations, J. A., Morni, M. A., William-Dee, J., Inayah, N., Jayanti, E. D., Nurdin, M.R.T.J., Griffin, K. E., Khan, F. A. A., Heaney, L. R., Rowe, K. C., Esselstyn, J. A. Accepted. Systematics and historical biogeography of Crunomys and Maxomys (Muridae: Murinae), with the description of a new species from Sulawesi and new genus-level classification. Journal of Mammalogy
2024
Handika, H. and Esselstyn, J. A. 2024. SEGUL: Ultrafast, memory-efficient and mobile-friendly software for manipulating and summarizing phylogenomic datasets. Molecular Ecology Resources, 24(7). https://doi.org/10.1111/1755-0998.13964
Nations, J.A., Kohli, B.A., Handika, H. , Achmadi, A.S., Polito, M.J., Rowe, K.C. and Esselstyn, J. A. 2024. The roles of isolation and interspecific interaction in generating the functional diversity of an insular mammal radiation. Oikos, p.e10888. https://doi.org/10.1111/oik.10888
Nations, J. A., Handika, H. , Mursyid, A., Butsa, R. D., Apandi, Achmadi, A. S. Esselstyn, J. A. 2024. Three new species of shrew (Soricidae: Crocidura) from West Sumatra, Indonesia: elevational and morphological divergence in syntopic sister taxa. Journal of Mammalogy, 105 (2), 372-389. https://doi.org/10.1093/jmammal/gyad126
2023
Mursyid, A., Achmadi, A.S., Novarino, W., Handika, H. , Nugroho, H.A., Anita, S., Adams, A.L., Rowe, K.M.C. and Rowe, K.C. 2023. Trypanosoma (Euglenozoa: Kinetoplastea) infections in rodents, bats, and shrews along an elevation and disturbance gradient in Central Sulawesi, Indonesia. Contributions to Mammalogy and Zooarchaeology of Wallacea, pp.663-671. http://dx.doi.org/10.3853/j.2201-4349.75.2023.1786
Achmadi, A. S., Fahri, F., Gazzard, A., Handika, H. , Inayah, N., Kennerley, R. J., Lanusi, A. A., Nangoy, M., Nurdin, M. R., Rowe, K. C., Sheherazade. 2023. Conservation status and priorities for Sulawesi's unique small mammal fauna. Journal of Mammalogy, 104 (3), 1-12. https://doi.org/10.1093/jmammal/gyad126
Swanson, M.T., Henson, M.W., Handika, H. , Achmadi, A.S., Anita, S., Rowe, K.C. and Esselstyn, J.A. 2023. Mycoplasmataceae dominate microbial community differences between gut regions in mammals with a simple gut architecture. Journal of Mammalogy, 104(1), pp.146-158. https://doi.org/10.1093/jmammal/gyac098
2021
Esselstyn, J.A., Achmadi, A.S., Handika, H. , Swanson, M. T., Giarla, T.C. and Rowe, K.C. 2021. Fourteen new, endemic species of shrew (genus Crocidura) from Sulawesi reveal a spectacular island radiation. Bulletin of the American Museum of Natural History, 454(1), pp.1-108. https://doi.org/10.1206/0003-0090.454.1.1
Handika, H. , Achmadi, A.S., Esselstyn, J.A., and Rowe, K.C. 2021. Molecular and morphological systematics of the Bunomys division (Rodentia: Muridae), an endemic radiation on Sulawesi. Zoologica Scripta, 50(2), pp. 141–154. https://doi.org/10.1111/zsc.12460
Nations, J.A., Mursyid, A., Darma Busta, R., Adrian, S.P., Handika, H. , Apandi, Achmadi, A.S. and Esselstyn, J.A. 2021. The first report of albinism in a Sundaland endemic rodent. Mammalia, 85(2), pp.168-172. https://doi.org/10.1515/mammalia-2020-0047
2020
Harapan, T.S., Agung, A.P., Handika, H. , Novarino, W., Tjong, D.H. and Tomlinson, K.W. 2020. ew records and potential geographic distribution of Elongated Caecilian, Ichthyophis elongatus Taylor, 1965 (Amphibia, Gymnophiona, Ichthyophiidae), endemic to West Sumatra, Indonesia. Check List, , 16(6), pp. 1695-1701. https://doi.org/10.15560/16.6.1695
Winterhoff, M.L., Achmadi, A.S., Roycroft, E.J., Handika, H. , Putra, R.T.J., Rowe, K.M.C., Perkins, S. and Rowe, K.C. 2020. Native and introduced trypanosome parasites in endemic and introduced murine rodents of Sulawesi. Journal of Parasitology, 106(5), pp.523-536. https://doi.org/10.1645/19-136
2019 and earlier
Esselstyn, J.A., Achmadi, A.S., Handika, H. , Giarla, T.C. and Rowe, K.C. 2019. A new climbing shrew from Sulawesi highlights the tangled taxonomy of an endemic radiation. Journal of Mammalogy, 100(6), pp.1713-1725. https://doi.org/10.1093/jmammal/gyz077
Janra, M.N., Noske, R.A., Chornelia, A., Handika, H. , Mursyid, A., Agung, A. and Saputra, A. 2018. A second breeding record of Chestnut-naped Forktails Enicurus ruficapillus in Sumatra, and observations suggesting females alone incubate. Kukila, 21, pp.13-16.
Demos, T.C., Achmadi, A.S., Handika, H. , Rowe, K.C. and Esselstyn, J.A. 2017. A new species of shrew (Soricomorpha: Crocidura) from Java, Indonesia: possible character displacement despite interspecific gene flow. Journal of Mammalogy, 98(1), pp.183-193. https://doi.org/10.1093/jmammal/gyw183
Demos, T.C., Achmadi, A.S., Giarla, T.C., Handika, H. , Rowe, K.C. and Esselstyn, J.A. 2016. Local endemism and within‐island diversification of shrews illustrate the importance of speciation in building Sundaland mammal diversity. Molecular ecology, 25(20), pp.5158-5173. https://doi.org/10.1111/mec.13820
Esselstyn, J.A., Achmadi, A.S., Handika, H. and Rowe, K.C. 2015. A hog-nosed shrew rat (Rodentia: Muridae) from Sulawesi Island, Indonesia. Journal of Mammalogy, 96(5), pp.895-907. https://doi.org/10.1093/jmammal/gyv093
Handika, H. , Nurdin, J. and Rizaldi. 2013. Small Terrestrial Mammals Community on Mount Singgalang, West Sumatra. Jurnal Biologi Universitas Andalas, 2(2), pp.103-109. https://doi.org/10.25077/jbioua.2.2.%25p.2013